Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID72779_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-9.trna358
tRNA locuschr-9 : 71759889 - 71759805 (-)
IsoacceptorAsp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asp isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderATC

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATC isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
GGACTCATAAGCTCAAAATGGTAGAGCGCCCAAGCCTATCATGCGGAGGTTGATGGTTCAAATCCATTTAAGTTTCCA
tRNA secondary structure
>>>>>.>...>>>>.........<<<<..>...>>..............<<.<.....>>>>>.......<<<<<<.<<<..<<.
Upstream sequence (upto 100nt)
CATGTTGGTCGATAATATCTTTGGATATGGAATTGTACACATGGGTATACATGTTATTTATTATTGTGCGCATGTCGATTCTTTTTGTTGTTTATTTCAG
Downstream sequence (upto 100nt)
TGTTATGTTTATTGAATATGGATAGCGTTACTGGTGCTTAGATGCACGATTCAAGTTGTATATGCGGTGTACAAACTGGTGCACCTTGTCTTGTCTTCCG
Mature tRNA
GGACUCAUAAGCUCAAAAUGGUAGAGCGCCCAAGCCUAUCAUGCGGAGGUUGAUGGUUCAAAUCCAUUUAAGUUUCCA
Intron Sequence
CAAGGTT
Intron Position42-48
Infernal Score22.2
HMM Score13.40
Secondary structure Score8.80