Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID72743_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-9.trna317
tRNA locuschr-9 : 110565035 - 110564953 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
GGGTCGATGCCGGAGTGGTTAATGGGGACGGACTGTAAATTCGTTGGCATATGTCTACGCTGGTTCAAATCCAGCTCGGCCCA
tRNA secondary structure
>>>>>>>..>>>..........<<<..>>>>>.......<<<<<..>>>><<<.<...>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTTCAAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAGGGTACTATGAAAGGAGGTTGATCATGGATTTATCTATAAGTCTAAAATGGATTCTTCCT
Downstream sequence (upto 100nt)
AAAATCCTCCGATCCATCATGAGATAATAGAACAAATTCTGCCTCCAGAAACCAGACGAAGAAAGAAAAGAATACTTTTTTACGCTATATCCTTAATTTA
Mature tRNA
GGGUCGAUGCCGGAGUGGUUAAUGGGGACGGACUGUAAAUUCGUUGGCAUAUGUCUACGCUGGUUCAAAUCCAGCUCGGCCCA
HMM Score32.60
Secondary structure Score22.00