Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID72479_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-8.trna45
tRNA locuschr-8 : 26112275 - 26112345 (+)
IsoacceptorSup

[NOTE: User can view the results of the consensus based study of all the tRNAs of Sup isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderTCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCA isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
GAACTTGTGGTGCAATGGTAGCATGACTGACTTCATGTCATATGATGCGTGTTCGACTCACGCCAAGTTCA
tRNA secondary structure
>>>>>>>..>>>>.......<<<<...>>>.......<<<......>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTTAATGGATCAACTACCGTTGTTGATCCTTTTAACAACATTTTCTTTGATTAGTATACTCATGCTTGTAGTTTAAATCATGTAATTTCCTTCCAATGTT
Downstream sequence (upto 100nt)
CTCAATTTACATGGATCAACTTTCATTGTTGATCCACTAAATTGGATCAACTTCTACTGTTGACCTTTTTTTTTGGATCCACTATCGTTGTTGACCCCCT
Mature tRNA
GAACUUGUGGUGCAAUGGUAGCAUGACUGACUUCAUGUCAUAUGAUGCGUGUUCGACUCACGCCAAGUUCA
HMM Score19.70
Secondary structure Score22.70