Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID72264_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-8.trna101
tRNA locuschr-8 : 91329440 - 91329532 (+)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderTGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGA isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
AGAGAGATGGCCGAGTGGTTGATAGCTCTGGTCTTGAAAACCGTTATAGTTCTTTATTCAAAACTATTGAGGGTTCGAATCCCTCTTTCTCCT
tRNA secondary structure
.>>>>>>..>>.>.........<.<<..>>>..........................<<<........>>>>>.......<<<<<<<<<<<..
Upstream sequence (upto 100nt)
TATAGATTAACGATTGGTATGTTCTACAGATAGTGATGGTATCAACTCAGGTGACCATGTTCTATTCAGCGGAATACAAATAAAATAAAGATTGTCTTTC
Downstream sequence (upto 100nt)
TTTTCTCATTGAATAGATTTATTTATTTATTTTTTTGGCTTAACCTGGTATCATAAGGTGAAACGGTCGGCTAGGTGGGATAGCCGAGCCATAAAAAAGA
Mature tRNA
AGAGAGAUGGCCGAGUGGUUGAUAGCUCUGGUCUUGAAAUUCAAAACUAUUGAGGGUUCGAAUCCCUCUUUCUCCU
Intron Sequence
AACCGTTATAGTTCTTT
Intron Position39-55
Infernal Score34.3
HMM Score28.70
Secondary structure Score5.60