Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID72212_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-7.trna554
tRNA locuschr-7 : 10599394 - 10599311 (-)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderCAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAA isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
GTCAGGATGGCCGAGTGGTCTAAGGCTTCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCATTGGTTCAAATCCCACTTCTGACA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>><<<...<....>.>>.......<<.<.<<<<<<<.
Upstream sequence (upto 100nt)
AACTTAGGAATGACAATGAGGAAACCCTTATACACCCGGTCATTGGTGATTCCGAGATGGTATTCTAAGGAAGTTGGTTTTTCGAATTTCATCCACCGAT
Downstream sequence (upto 100nt)
TTTTTAGTTTTCCATATTCTCTCCATCCTAAGCTTTACATCCTTTCTCTTTCAATCCATTTGCCATCATATATAATTGTAGGTGGCGAGTAATTGATTAT
Mature tRNA
GUCAGGAUGGCCGAGUGGUCUAAGGCUUCAGACUCAAGUUCUGGUCUUCGAAAGAGGGCAUUGGUUCAAAUCCCACUUCUGACA
HMM Score49.10
Secondary structure Score10.90