Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID72150_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-7.trna453
tRNA locuschr-7 : 113974708 - 113974635 (-)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderAGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGT isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
GCTTTCATAGCTCAGTTGGTTAGAGCACCGGTTTAGTAAGCCGAAGGTCTTGAGTTTATCTCTCAATGAAAACA
tRNA secondary structure
>.>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<.<.
Upstream sequence (upto 100nt)
GGAATTATCCTTTCAGATGCTTTTAGAGCGAAATCTCCTGATGGGTGATTTTCTTTGTGGTCACTTTCTGAGTTTTATTTGGTTGGCACCTGACTAAAGA
Downstream sequence (upto 100nt)
TTTTATTAATTTTAGTTTTCTTTTCCACGCTATAATAATTTTGTTTAATGATTTTTGTTTTTGTTTTTCTACAGTTAATGAAAGCATTTTATGGATTTTT
Mature tRNA
GCUUUCAUAGCUCAGUUGGUUAGAGCACCGGUUUAGUAAGCCGAAGGUCUUGAGUUUAUCUCUCAAUGAAAACA
HMM Score31.60
Secondary structure Score19.50