Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID71893_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-7.trna155
tRNA locuschr-7 : 175636063 - 175636143 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
TGCGTCCGCGCGTGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCCGTCTCCGCAA
tRNA secondary structure
>>>>.......>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<.
Upstream sequence (upto 100nt)
AGAGCCCCTTTACCATTCTGTATAAATGGGTTATTTTATTTGTATAGATATGGTAGAGGGGCACATACAACCCTTGTTTATCTATTAGTCCCCAGCTATT
Downstream sequence (upto 100nt)
TATCATTTTTTTGCCAAAAAATTTAGGTTTTACTTTCTTAACTAGTAATTTATGCCCTTTGTTCCTCTGGGATGGGAGGAAAAGAAGGGTGAAGATAGAA
Mature tRNA
UGCGUCCGCGCGUGUAGAGCAGCUUGGUAGCUCGCAAGGCUCAUAACCUUGAGGUCACGGGUUCAAAUCCCGUCUCCGCAA
HMM Score39.80
Secondary structure Score19.90