Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID71795_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna482
tRNA locuschr-6 : 1382164 - 1382091 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderGAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAT isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCTCATGTATCTCAGTTGGTTAGAGTGTCGGTCTGATGAGCCGAAGGTTGCGGGTTCGAGCCCCTCCGGGAGCA
tRNA secondary structure
>>>>.>>...>>>.........<<<..>>>>>.......<<<<<.....>.>>>.......<<<.<<<.<<<<.
Upstream sequence (upto 100nt)
CGGCTTTTATATGATATTCAACTCCGTCGACCTCAATAACTTTTTCTTCAAAAATAGTAAACAATGACTTACATTAATGCTAGGTTAAATATTAACAATT
Downstream sequence (upto 100nt)
ATCTCTTAATATTTTATGCTTCAAAAGAAAGGTAAAATATTAACTTCAAATAAATCATAATAAAATGATTGGATTGAAAATACATTGTATGGCAAAAACC
Mature tRNA
GCUCAUGUAUCUCAGUUGGUUAGAGUGUCGGUCUGAUGAGCCGAAGGUUGCGGGUUCGAGCCCCUCCGGGAGCA
HMM Score57.20
Secondary structure Score-1.30