Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID71323_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna425
tRNA locuschr-5 : 82915658 - 82915585 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderAAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAC isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
GTTTTCATGGTATAGTTAGTTATCACTTCAGTCTAACACACTGAAGGTCCCCAGTTCGGTCCTGGGAGAAGCCA
tRNA secondary structure
>.>>>>...>>.............<<.>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<.<.
Upstream sequence (upto 100nt)
TCTTCTGGCCTGTCCTTACTCTAGAGCTATTTGGTTCAAACTTGCTAGATACAGATTTTAATCTTAATGACTGTACTCTATCATGTCCCAGAGTAACCTC
Downstream sequence (upto 100nt)
ATAATTTTTAACAATTTCATTTTTGCTGATGTCACTGTAGTACAGTGATAAAGTCATTGGGTGATGATACCAGTGACCTGAGTTCGAAACTCGCTAGCAC
Mature tRNA
GUUUUCAUGGUAUAGUUAGUUAUCACUUCAGUCUAACACACUGAAGGUCCCCAGUUCGGUCCUGGGAGAAGCCA
HMM Score23.30
Secondary structure Score12.40