Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID71091_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna155
tRNA locuschr-5 : 165857235 - 165857328 (+)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderGAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAT isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
ACGACCTTAGCTCAACTGGTAGAGTGAAGGGAATGATGGCAGTATGGTACTGTTTCAGATCCTTTGGTTGCCGGTTCGAATCCGGCAGGTCGTG
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>.>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CTTGGTAGTCTATGCAAACCCAATGGCCTAATCATCGATGCATACTATCTTGCGAACTACCAAGTAGAGTGCGCAGATCAATGAGAAGGCAAGACCTAAT
Downstream sequence (upto 100nt)
GGTGAGGAACGAGGAAATAACCAACTTGATTGCTTCTTCCACGGGTGCCGCAGCACGAACTTGGGAGCTGTAAACGGATGCATGCAGTGTTTTTGCTCAT
Mature tRNA
ACGACCUUAGCUCAACUGGUAGAGUGAAGGGAAUGAUGAUCCUUUGGUUGCCGGUUCGAAUCCGGCAGGUCGUG
Intron Sequence
GCAGTATGGTACTGTTTCAG
Intron Position39-58
Infernal Score45.2
HMM Score17.90
Secondary structure Score27.30