Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID70842_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna232
tRNA locuschr-4 : 57407663 - 57407593 (-)
IsoacceptorTrp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Trp isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderCCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CCA isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
AAACTTGTGGTGCAATGATAGCATGACTGACTCCATATCAGATGATGCGTGTTCGACTCATGCCAAGTTCA
tRNA secondary structure
.>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<..
Upstream sequence (upto 100nt)
TTTAATGGATCAACTATTGTTGTTGATCCTTTCAACAACATTTTCTTGGATTAGTATAATCATGCTTGTAGTTTAAATCATGTAAATTTCTTCCAATCTT
Downstream sequence (upto 100nt)
CTCTATTTACATGGATCAACTTCTACTGTTGATCCTTTTTTTTGGATCAACTACCGTTGTTGATCCCCTAAATTGGATCAACTTCTACTGTTGGTTCTAT
Mature tRNA
AAACUUGUGGUGCAAUGAUAGCAUGACUGACUCCAUAUCAGAUGAUGCGUGUUCGACUCAUGCCAAGUUCA
HMM Score15.10
Secondary structure Score19.20