Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID70760_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna138
tRNA locuschr-4 : 130685998 - 130686068 (+)
IsoacceptorTrp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Trp isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderCCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CCA isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
GAACTTGTGGTACAATGGTAGCATGACTGACTCCATGTCAGATGATGCGTGTTCGGCTCACGCCAAGTTCA
tRNA secondary structure
>>>>>>>..>>.>.......<.<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GGGGAGGTAACTCAAATTATGATCTTCTCCAAGGGAGGTAACGCAGATTAACCCTATAATCATGCTTGTAGTTTAAGTCATGTAATTTTCTTCCAATGTT
Downstream sequence (upto 100nt)
CTCCATTTACATGGATCAACTTTCATTGTTGATCCAATTTAGGGGATCAACTACCATTGTTGAACCCCTAAATTGGATAACTTCTACTGTTGATCATTTT
Mature tRNA
GAACUUGUGGUACAAUGGUAGCAUGACUGACUCCAUGUCAGAUGAUGCGUGUUCGGCUCACGCCAAGUUCA
HMM Score10.10
Secondary structure Score22.80