Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID70400_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna118
tRNA locuschr-3 : 122319744 - 122319815 (+)
IsoacceptorPhe

[NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderAAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAA isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
GTTGGGATAGCTCAGTTGGTAGAGCAGAGGACTAAAAGTCCTCGTGTCACCAGTTCAAATATGGTTCTGACA
tRNA secondary structure
>>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>.........<<<<<<<<<<.
Upstream sequence (upto 100nt)
AATTCCAGGGCCTGGGTAAGATTTTGTAATGCTTTTATATTCTCTTGAATTGACATATATCCAAGCCCTCTAGTAGGATGGGGATGGCGCCTCAAGAAGG
Downstream sequence (upto 100nt)
TTGAGTATCTACTGTTAAGTTCCTGCTATTGAGCATCCATTATTAACCACAGATTAATAATAGATACTCATACAAATTCGATATGAAATAGCATACATAC
Mature tRNA
GUUGGGAUAGCUCAGUUGGUAGAGCAGAGGACUAAAAGUCCUCGUGUCACCAGUUCAAAUAUGGUUCUGACA
HMM Score24.60
Secondary structure Score13.30