Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID7019_PtRNAdb
Plant SourceArachis hypogaea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-A07.trna174
tRNA locuschr-A07 : 33688820 - 33688749 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Arachis_hypogaea plant by clicking on the isoacceptor]

IsodecoderTTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTT isodecoder in Arachis_hypogaea plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCCATCTTAGCTCAGTGGTAGAGCGTGTGGTTTTTAACCACGTGGTCGTGGGTTCGATCCCCACAGACGGCG
tRNA secondary structure
>>>.>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.
Upstream sequence (upto 100nt)
GAACAAATAATTTATTACCTTGCTATTAATTATATTTTAATATTTTCTCTTTCTTTATTATTGTGTTGTAATTATATCAAAACTAAGAGTTTAACAACAA
Downstream sequence (upto 100nt)
TTAATTATATAATGTAACTAACATATTTTATTAGAAACAAAATTTAAAAAAAATACATTAATGTACATTATAAAAAACTTAAAATTTCCTTAGGAAAAGG
Mature tRNA
GCCAUCUUAGCUCAGUGGUAGAGCGUGUGGUUUUUAACCACGUGGUCGUGGGUUCGAUCCCCACAGACGGCG
HMM Score65.80
Secondary structure Score18.80