Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID70195_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna257
tRNA locuschr-2 : 152679330 - 152679248 (-)
IsoacceptorAsp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asp isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderATC

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATC isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
GGACTCATAAGCTCAAAATGGTTGAGCGCCCGGCCTATCATGCGGAGGTTGATGGTTCAAATCCATCTAAGTTTCA
tRNA secondary structure
>>>>>.>...>>>>.........<<<<...>.>>..............<<.<.....>>>>>.......<<<<<<.<<<<.<.
Upstream sequence (upto 100nt)
GACATCCATGTCACGTGAACATATAAATTAGATTTGACATCGCTTGCACAGTCTTTTTTGGTTTGAAATGCTCCTAAAATTCCAATTTTAGTTTGTAACA
Downstream sequence (upto 100nt)
TTGTTAGGTTTATTCAATGTGGATAGTATTGTTCGTGCTTAGGTAGTCGATTCAAGTTGTATATGTGTACAAACTCGTGCATCTTGTCTTGTCTCATGAA
Mature tRNA
GGACUCAUAAGCUCAAAAUGGUUGAGCGCCCGGCCUAUCAUGCGGAGGUUGAUGGUUCAAAUCCAUCUAAGUUUCA
Intron Sequence
CAAGGTT
Intron Position41-47
Infernal Score25.8
HMM Score14.70
Secondary structure Score11.10