Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID70034_PtRNAdb
Plant SourcePapaver somniferum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-1.trna80
tRNA locuschr-1 : 61522710 - 61522779 (+)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Papaver_somniferum plant by clicking on the isoacceptor]

IsodecoderTCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCT isodecoder in Papaver_somniferum plant by clicking on the isodecoder]

tRNA Sequence
GAATCTGTGGCGCAATAGTAGCGCATCTGACTCTGTCAGAAGGTTGCGTGTTCGATTCACGTCTGATTCT
tRNA secondary structure
>>>>>.>..>>>>.......<<<<.>>>>>.....<<<<<.....>>>>>.......<<<<<<.<<<<<.
Upstream sequence (upto 100nt)
GAAGGAAGTTGCTTAACATCGACAGCTTGTCCCTAACAGAGGTAAATCATCGTGTCCGCTCTTACTTATTTGTAGCTTCACAAACACCCGACTCCAGTAT
Downstream sequence (upto 100nt)
CTAAGCGGTTCAAAATAAAATTACTGCACATTTCATTCTTTTTATTTGCAATTTCTTTTTCCATCATCTTCATGCAGTTTCTTAGATACATTTCATTCTT
Mature tRNA
GAAUCUGUGGCGCAAUAGUAGCGCAUCUGACUCUGUCAGAAGGUUGCGUGUUCGAUUCACGUCUGAUUCU
HMM Score24.40
Secondary structure Score24.90