Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID68923_PtRNAdb
Plant SourcePanicum miliaceum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-4.trna5
tRNA locuschr-4 : 3739147 - 3739218 (+)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Panicum_miliaceum plant by clicking on the isoacceptor]

IsodecoderGAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAC isodecoder in Panicum_miliaceum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGGGATATAATTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAGCCTGATTATCCCTA
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CCATAATAGTGCGGAAAGAAAGCCCGGAGGAAGAGTGGCCTTGAGTTTCTCGCCCCTTTGCCTTAGGATTCATTAATTCTCTTTCTCGATGGGACGGGGA
Downstream sequence (upto 100nt)
AACCTAATGTGAGTTTTTTCTATTTTGACTTACTCCCCCACCACGATCGAACGGGAATGGATAAGAGGCTTGTGGGATTGACGTGATAGGGTAGGGTTGG
Mature tRNA
AGGGAUAUAAUUCAGCGGUAGAGUGUCACCUUGACGUGGUGGAAGUCAUCAGUUCGAGCCUGAUUAUCCCUA
HMM Score13.80
Secondary structure Score34.10