Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID68753_PtRNAdb
Plant SourcePanicum miliaceum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-2.trna47
tRNA locuschr-2 : 51617060 - 51616962 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Panicum_miliaceum plant by clicking on the isoacceptor]

IsodecoderATA

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATA isodecoder in Panicum_miliaceum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGATGGTGGCGCAGTTGGCTAGCACTTAGGTCCATAGCTAAAAGCGAGTGATCCTGAGGTCGAGAGTTCGAGCCAGTTCAAGCCTCTCTCTCACCCCA
tRNA secondary structure
>>>.>>>..>.>>.........<<.<.>>>>......................<<<<.....>>>>>...................<<<<<<<<.<<<.
Upstream sequence (upto 100nt)
GAGCCCTCATGTCCCTTGATTAATTGCTTTATTAGGGAAAAGGCAGCCTTGTGATGAATGAAAATGTTATGTACCGTTTTGTCGAACAACATATCAAAAT
Downstream sequence (upto 100nt)
CACAAAAGAGCAATGATTAAACATGTGCTAATGTGACTGGTTGGGTCCGTCACAGCTCACTGATCTCTTGATTAGCTACAGCACACATGAGCTCTTTTTT
Mature tRNA
GGGAUGGUGGCGCAGUUGGCUAGCACUUAGGUCCAUAGAUCCUGAGGUCGAGAGUUCGAGCCAGUUCAAGCCUCUCUCUCACCCCA
Intron Sequence
CTAAAAGCGAGTG
Intron Position39-51
Infernal Score32.4
HMM Score21.00
Secondary structure Score11.40