Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID67554_PtRNAdb
Plant SourceOstreococcus tauri     |     Cryptogamae -->Algae
Genome levelNuclear
tRNA IDchr-7.trna3
tRNA locuschr-7 : 219769 - 219576 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Ostreococcus_tauri plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Ostreococcus_tauri plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGGAATTAACTCAGTTGGTTAGAGTGCAGGTCTCATAGCAAAACAAAATACTGCAATATGGGCATCGCGAGGTGCTTCGTATCTACCAGCCACAAAACTTCACCGAGCGAACGCTCGCGCACGACACGTCGTGCTCCAAGATTGACTCTCGAGAGTTATCCTGAAGTCGCCAGTTCGATCCTGGCATTCCGCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>.................................................................................................................................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTGTCGGACCACGATTCACTTGGTGACCAGTAATGACTCGACGACGAGTGGCTCCGAGGACTCCACCGGGGTCTCGACTCCACGCGTCGGACGCAGTGCA
Downstream sequence (upto 100nt)
TTTCTTTTTGCATATTCGTTCCCTCGTTAAGTTACAAGTTACGCGTACGCTCGCTCCGCGCCCTCCAACGTGTTCTGCAGCAAAATCGCGATGGTCATTG
Mature tRNA
GCGGAAUUAACUCAGUUGGUUAGAGUGCAGGUCUCAUAAUCCUGAAGUCGCCAGUUCGAUCCUGGCAUUCCGCA
Intron Sequence
GCAAAACAAAATACTGCAATATGGGCATCGCGAGGTGCTTCGTATCTACCAGCCACAAAACTTCACCGAGCGAACGCTCGCGCACGACACGTCGTGCTCCAAGATTGACTCTCGAGAGTT
Intron Position39-158
Infernal Score57.7
HMM Score28.10
Secondary structure Score29.60