Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID67537_PtRNAdb
Plant SourceOstreococcus tauri     |     Cryptogamae -->Algae
Genome levelNuclear
tRNA IDchr-1.trna2
tRNA locuschr-1 : 769314 - 769138 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Ostreococcus_tauri plant by clicking on the isoacceptor]

IsodecoderGCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCT isodecoder in Ostreococcus_tauri plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GACGACGTGCCCGAGTGGTTAAGGGGAACGCCTGCTACACGGCGTGTGCGTCGCTTCAATACGTGACGCACCGTCGAGGACAAAATACGAGATTTGCCAACGACGGTTGGTGTAACCGGCGACATGCAGCCGAGTGTTTGTGCAACGCACGCGCGAGTTCGAATCTCGTCGTCGTCG
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>......................................................................................................<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTTCGTGACCCGTAAGCTTTCACGCACGCACGGTGCGTCGTTTGTCGGTTGACATGTATCGATCACACTCGTATTCAGAGTCCGAGACTCGCATCACCTA
Downstream sequence (upto 100nt)
ATGACTACGATTTCTTTTGCGTCGTCGCGATTGTGTGTGCGTGCGTCATGTACTTTTACACGTCGGACGCGCGTCGCGAGTGAGGGCGTTCGGAGGCGAC
Mature tRNA
GACGACGUGCCCGAGUGGUUAAGGGGAACGCCUGCUAAGUGUUUGUGCAACGCACGCGCGAGUUCGAAUCUCGUCGUCGUCG
Intron Sequence
CACGGCGTGTGCGTCGCTTCAATACGTGACGCACCGTCGAGGACAAAATACGAGATTTGCCAACGACGGTTGGTGTAACCGGCGACATGCAGCCG
Intron Position38-132
Infernal Score56.5
HMM Score22.50
Secondary structure Score34.00