Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID67533_PtRNAdb
Plant SourceOstreococcus tauri     |     Cryptogamae -->Algae
Genome levelNuclear
tRNA IDchr-17.trna1
tRNA locuschr-17 : 64365 - 64521 (+)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Ostreococcus_tauri plant by clicking on the isoacceptor]

IsodecoderGCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCC isodecoder in Ostreococcus_tauri plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCACTCGTGGTCTAGTGGTAGAATAGCCGCCTGCCAACCAAATTGGCAACGGCTGGCGCGTTCGTTCGCGCTACACAATGAATCTGCTCGTAGTGAACACTACGTATATGCTATATGCAGGGCGCGGCAGACCCGGGTTCGATTCCCGGCGAGTGCA
tRNA secondary structure
>>>>>>>..>>.>.......<.<<.>>>>>.............................................................................................<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CGCGCGGGTCACGGGCAAAAATAATACCCATAACTTTTGCGTCGTTACCGCTTACGATTCTGGGTGTACGTCGATTTAGCCCTTCCATCCCATATCAAGA
Downstream sequence (upto 100nt)
GTGAACGAGCGAACACGACGAAGAAACGAAAAACTTTTTTGACCTTGCGAAGGCTTTTAATTTTTAATCAAAGAGCTTGCATTGAATTCAGTTCTTCACC
Mature tRNA
GCACUCGUGGUCUAGUGGUAGAAUAGCCGCCUGCCACGCGGCAGACCCGGGUUCGAUUCCCGGCGAGUGCA
Intron Sequence
ACCAAATTGGCAACGGCTGGCGCGTTCGTTCGCGCTACACAATGAATCTGCTCGTAGTGAACACTACGTATATGCTATATGCAGGG
Intron Position37-122
Infernal Score59.6
HMM Score44.20
Secondary structure Score15.40