Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID67530_PtRNAdb
Plant SourceOstreococcus tauri     |     Cryptogamae -->Algae
Genome levelNuclear
tRNA IDchr-16.trna1
tRNA locuschr-16 : 231069 - 230885 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Ostreococcus_tauri plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Ostreococcus_tauri plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCCTTCATAGCTCAGTTGGTAGAGCGCACGCCTCTTAAATAAGGCGTCCCGATGACTTCGGGCTCTATATGCACATTTCAACTTCAACCGCACGTAACAGTGTGATTGACTGAATGCTTGACAGTACACGGACATCGTCCCGTAGTGTAAGCGTGTGGTCGCGGGTTCGAGCCCCGTTGAAGGTA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CTATACTAAATACTTCATTTTTCCGGACCGACAATTGTTACACCTCGTAGTATAAGCTCATACAAGCTGTGAACGCGTCGACCGACGTGATCCGAACAAG
Downstream sequence (upto 100nt)
TCGATTTTTTTTAAGCCCAAAACGGCCAAGGGTGGCCACGGTGCGCGCGGATTCGGGAGTACACGGCTCTTTCATCAAGGGTGGCCACGGTGCGCGCGGA
Mature tRNA
GCCUUCAUAGCUCAGUUGGUAGAGCGCACGCCUCUUAAGCGUGUGGUCGCGGGUUCGAGCCCCGUUGAAGGUA
Intron Sequence
AATAAGGCGTCCCGATGACTTCGGGCTCTATATGCACATTTCAACTTCAACCGCACGTAACAGTGTGATTGACTGAATGCTTGACAGTACACGGACATCGTCCCGTAGTGTA
Intron Position38-149
Infernal Score73.7
HMM Score53.00
Secondary structure Score20.70