Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID67524_PtRNAdb
Plant SourceOstreococcus tauri     |     Cryptogamae -->Algae
Genome levelNuclear
tRNA IDchr-11.trna3
tRNA locuschr-11 : 277230 - 277158 (-)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Ostreococcus_tauri plant by clicking on the isoacceptor]

IsodecoderTTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTC isodecoder in Ostreococcus_tauri plant by clicking on the isodecoder]

tRNA Sequence
B-Box
TTCTTCGTAGTGTAGATGGTTATCACGCTAGGCTTTCACCCTAGAGACTCGGGTTCGAGTCCCGGCGAGGAAA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CCCCGTCGGGTCCTCTCTACTAGCGCACGGAATACATCGTGCGATCGGAGATTGCTGAAAAACGAAGAACTGAATCGCCGCGAGTCATCCACTCGGGCGG
Downstream sequence (upto 100nt)
GATCGGAATCAATAGATTCATTTTTTTAAGCCCATCAAGAAAATTTGGGAAGACCAACCAGGTGCTGATATTGGGACCACCGCTTTGCATCGCATAGTAT
Mature tRNA
UUCUUCGUAGUGUAGAUGGUUAUCACGCUAGGCUUUCACCCUAGAGACUCGGGUUCGAGUCCCGGCGAGGAAA
HMM Score43.00
Secondary structure Score26.60