Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID67521_PtRNAdb
Plant SourceOstreococcus tauri     |     Cryptogamae -->Algae
Genome levelNuclear
tRNA IDchr-10.trna3
tRNA locuschr-10 : 530118 - 529957 (-)
IsoacceptorGln

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gln isoacceptor in Ostreococcus_tauri plant by clicking on the isoacceptor]

IsodecoderTTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTG isodecoder in Ostreococcus_tauri plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGTCCTATGGTGTAGTCGGTAACACTGTGGACTTTGAAAGACCACGAGCGCACGACGTCGTGCGCGCGAAACACCCCCTCGAGCAGCCGTCACACGCTGCGTGAGCGCGTAGATGCTTGGAAAAGTCATCCACCGCCTCTGGTTCGATTCCAGGTGGGACCT
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.................................................................................................<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTATCCACACCAAGGCGAGTGGGTTTGTCCGTCCCGATTCATCCGAAACGCGTGTATTAGTGGTGAATAGCCCATCACGGCTCGATCCACGTACTCCAAC
Downstream sequence (upto 100nt)
GTACTGTATTTTTGTTAATTGGATCACGTTTCAACCTCTGCCTGAGGGACGGACCTGTTTTTTTTATATCACATCACACAGCCTCGACTACGACGCACAC
Mature tRNA
GGUCCUAUGGUGUAGUCGGUAACACUGUGGACUUUGAAUCCACCGCCUCUGGUUCGAUUCCAGGUGGGACCU
Intron Sequence
AAGACCACGAGCGCACGACGTCGTGCGCGCGAAACACCCCCTCGAGCAGCCGTCACACGCTGCGTGAGCGCGTAGATGCTTGGAAAAGTC
Intron Position38-127
Infernal Score53.0
HMM Score32.00
Secondary structure Score21.00