Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID6619_PtRNAdb
Plant SourceArachis hypogaea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-A02.trna27
tRNA locuschr-A02 : 43065124 - 43065196 (+)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Arachis_hypogaea plant by clicking on the isoacceptor]

IsodecoderTGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGT isodecoder in Arachis_hypogaea plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCCTGCTTAGCTCAGAGGTTAGAGCATCGCATTTGTAATGCGATGGTCATCGGTTCGATTCTAATAGCCGGCT
tRNA secondary structure
>>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<.<<<.
Upstream sequence (upto 100nt)
ACATATTCATTATGTTTGTAATAGCAAATTCCAAACTGTTAATAACTAAGATTCTATTAGTTTATTTAATTCCTATGCATGCGCATTTTCTTTTATATGA
Downstream sequence (upto 100nt)
TTTGTTTGATCTCTGTAGAAGAATGCGACCTATTATGGGACATACAATGCATTACAGACGTATGTTCATTACGCTTCAACCGGGTTATTCTATTCCACCT
Mature tRNA
GCCUGCUUAGCUCAGAGGUUAGAGCAUCGCAUUUGUAAUGCGAUGGUCAUCGGUUCGAUUCUAAUAGCCGGCU
HMM Score45.70
Secondary structure Score7.90