Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID64835_PtRNAdb
Plant SourceOryza brachyantha     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-4.trna4
tRNA locuschr-4 : 8166814 - 8166885 (+)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Oryza_brachyantha plant by clicking on the isoacceptor]

IsodecoderTCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCC isodecoder in Oryza_brachyantha plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGTCTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAGACGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CTGTTATTTTTGGTTACATGGTCAATACTTAATATATGTGCTGCCGTGGGTGTCGGAGGTTGTTTTCCAATAAGCCTTAGGTATTTTAGCAGGTAGGTGA
Downstream sequence (upto 100nt)
CGTTTCTAAGTATTTTTTTGTTGTTTTGGACTGTTTTTGCTTGTGTTTTTGTGTGGTTTGGGTGTTCTTTTTCACGCGAGGGTGACGAATGACACAGATG
Mature tRNA
GCGUCUGUAGUCCAACGGUUAGGAUAAUUGCCUUCCAAGCAAUAGACCCGGGUUCGACUCCCGGCAGACGCA
HMM Score46.70
Secondary structure Score27.40