Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID64698_PtRNAdb
Plant SourceOryza brachyantha     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-2.trna11
tRNA locuschr-2 : 6663631 - 6663702 (+)
IsoacceptorGln

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gln isoacceptor in Oryza_brachyantha plant by clicking on the isoacceptor]

IsodecoderTTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTG isodecoder in Oryza_brachyantha plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGTTCCATAGTGTAGTGGTTAGCACTCCAGACTTTGAATCTGGTAACCTGGGTTCGAATCCCGGTGGGACCT
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AACATAAGAAAAAGGAAAAAAGAATATAGAAATAATTTCTTGCCTTTTGCTGATGGAATATAAGACAAATGCCATCAGCAAGGGACCACACACAACATCT
Downstream sequence (upto 100nt)
TTTTTTAGTATTACCATACTCAAACGGAACACGCATAATCAATTGCTTGCAGAGCCAACTCTCTTTCACCATGTTATTGTTCAATACAGTGCATCGATAT
Mature tRNA
GGUUCCAUAGUGUAGUGGUUAGCACUCCAGACUUUGAAUCUGGUAACCUGGGUUCGAAUCCCGGUGGGACCU
HMM Score54.30
Secondary structure Score20.40