Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID63888_PtRNAdb
Plant SourceOlea europaea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-20.trna8
tRNA locuschr-20 : 4249398 - 4249470 (+)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Olea_europaea plant by clicking on the isoacceptor]

IsodecoderTCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCT isodecoder in Olea_europaea plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGCCCATGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGGCGATTGTGGGTTCGAGTCCCACTGGGCGTG
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AAATATTAAAAAAATTCAGTAAAGTTAAGAAGCCATGATGATATGTAAACATTGTGAGTTATTCAATAAATAAAATTATATTAACTCTTAACTCAAGATG
Downstream sequence (upto 100nt)
TTTTCAAATTTTTTGCATATTTGAAGAATGCCGCCTTCTCCCAAATTCTAAAACTTTTAAAGTAATTGATTTAATATTTTTTTTTTCAATTTTCATATTA
Mature tRNA
GCGCCCAUGGCCUAAUGGAUAAGGCGUCUGACUUCUAAUCAGGCGAUUGUGGGUUCGAGUCCCACUGGGCGUG
HMM Score50.00
Secondary structure Score18.10