Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID6375_PtRNAdb
Plant SourceArachis duranensis     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-A09.trna17
tRNA locuschr-A09 : 38931727 - 38931808 (+)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Arachis_duranensis plant by clicking on the isoacceptor]

IsodecoderTGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGA isodecoder in Arachis_duranensis plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTCGATATATCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTAGGTTTTGCCCGCGCAGGTTCGAACCCTGCTGTCGATG
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>......<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTACTATCGTGATTCGTGAACACGAATAAAATATTAATATTGAACACCGCTTGTTATATAAGTCTATTATAATACTAATTAGAATCTAAAATTCATCGTC
Downstream sequence (upto 100nt)
TTTTTTATCCACCATTGTGCAATCATCGATCGTCTAATCATTACGGGCCAATCATCAAGTCCTTTGCTTTTACTTAAATAAATTAGGTAAATTTTTATTT
Mature tRNA
GUCGAUAUAUCCGAGUGGUUAAGGAGACAGACUUGAAAUCUGUUAGGUUUUGCCCGCGCAGGUUCGAACCCUGCUGUCGAUG
HMM Score40.80
Secondary structure Score28.50