Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID63664_PtRNAdb
Plant SourceOlea europaea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-14.trna8
tRNA locuschr-14 : 6101406 - 6101488 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Olea_europaea plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Olea_europaea plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGATCCATAAGCTCAAAAATGGGGGAGCGCTCAATTTGCTTAATGCGTTTGAGAGGGTGGTGGTTCGATTCCACCTGGATTCG
tRNA secondary structure
>>>>>>>...>>>>..........<<<<.>>>>>..............<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GATTACGTACTAATGATGTTTTTAGACTATTTTAGAAGGCTAGTAGTGTTTTTAGACTATTCTAGATCAAAGGCTGCTGTTAACTCTCTTGTGAATGGAT
Downstream sequence (upto 100nt)
CTATTTTTAGTTTTCAAAAATTTATGTAGTCCTCGTTTGTAGCAATTTTTAACACAAAATAATTCATTTTTTTGAACGTTTTCTTTATGTCAACGGTTAT
Mature tRNA
GGAUCCAUAAGCUCAAAAAUGGGGGAGCGCUCAAUUUGCUUUUGAGAGGGUGGUGGUUCGAUUCCACCUGGAUUCG
Intron Sequence
TAATGCG
Intron Position41-47
Infernal Score31.3
HMM Score11.60
Secondary structure Score19.70