Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID62987_PtRNAdb
Plant SourceNelumbo nucifera     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-8.trna29
tRNA locuschr-8 : 48799090 - 48799161 (+)
IsoacceptorGln

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gln isoacceptor in Nelumbo_nucifera plant by clicking on the isoacceptor]

IsodecoderTTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTG isodecoder in Nelumbo_nucifera plant by clicking on the isodecoder]

tRNA Sequence
GGTTCTATGGTGTAGTGGTTAGCACTCTGGACTTTGAATCCAGCGACCTGGGTTCAACTCCCGGTAGGACCT
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTCTTTACATCTGGACTAAATTAGTTGAATTAACTTTTCAGGTAAAATGGTTATTGGTTCAAATCTTACTTTTGTCATTCCGAACACCCAATTAAAAAAT
Downstream sequence (upto 100nt)
TAAAAATTTATTTTTTTGATAGTCAAAAGAAGAAATATGACAAATAACCTGGTCTACAAACAAATTTGCACTGATACAAAACTTTGGTAATGCCAATGAT
Mature tRNA
GGUUCUAUGGUGUAGUGGUUAGCACUCUGGACUUUGAAUCCAGCGACCUGGGUUCAACUCCCGGUAGGACCU
HMM Score52.60
Secondary structure Score19.90