Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID62509_PtRNAdb
Plant SourceNelumbo nucifera     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna76
tRNA locuschr-3 : 88949363 - 88949435 (+)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Nelumbo_nucifera plant by clicking on the isoacceptor]

IsodecoderTAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAC isodecoder in Nelumbo_nucifera plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GATGCTGTGGTGTAGTGGTTATCACGGTAGTCTTACACACTAAAGGTCTCCAGTTCGATCCTGGGCAGCATCA
tRNA secondary structure
>>>>>>>..>>>..........<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTAATATAATTTTCGTCATTTTTTGTTGACCGTGGACTTAATGACATGTATTATCTTGAGAGCTGAGAATATTAACCGATACTCCCCTACTGTCACATGT
Downstream sequence (upto 100nt)
TTAATTTCACTTTTAACTAATTTTTTGTTTACATTGGGAAGCTTTGCATCTTTGGAACTGATCTTAGATCATGTCCTCTCTACTAGGGAATGCTAGGGCT
Mature tRNA
GAUGCUGUGGUGUAGUGGUUAUCACGGUAGUCUUACACACUAAAGGUCUCCAGUUCGAUCCUGGGCAGCAUCA
HMM Score34.60
Secondary structure Score26.60