Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID62451_PtRNAdb
Plant SourceNelumbo nucifera     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna23
tRNA locuschr-3 : 21114394 - 21114477 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Nelumbo_nucifera plant by clicking on the isoacceptor]

IsodecoderCAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAA isodecoder in Nelumbo_nucifera plant by clicking on the isodecoder]

tRNA Sequence
GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAGAGAAGGCGTGGGTTCAAATCCCACTTCTGACA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GAAGGTAGAGGAAAAAATAAGAAAAGTAGAGAAAGTTGATGGGAGTTTCTTAAATCTGTCCACGACAATAAGAAATGTATGAGAGATGATATTTGTCGCT
Downstream sequence (upto 100nt)
TTTTGGCATTTATATATATAAATGCATGAAAAAAAATGGTGATAGTCATCTCATTCAATGGACAAATGAAATGAGACTTGGGCCAAACATTCCATATACC
Mature tRNA
GUCAGGAUGGCCGAGUGGUCUAAGGCGCCAGACUCAAGUUCUGGUCUUCGAGAGAAGGCGUGGGUUCAAAUCCCACUUCUGACA
HMM Score53.70
Secondary structure Score23.00