Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID62425_PtRNAdb
Plant SourceNelumbo nucifera     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna154
tRNA locuschr-3 : 35982745 - 35982471 (-)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Nelumbo_nucifera plant by clicking on the isoacceptor]

IsodecoderGTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTT isodecoder in Nelumbo_nucifera plant by clicking on the isodecoder]

tRNA Sequence
CCGACCTTAGCTCAGTTGGCAGAGCGAGGGAATGTTAATCATTAGGTCGCTCGTTCGATTCTAGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>.>>.................................................................................................................................................................................................................<<.<<.....>>>.>.......<.<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATATTTATTAAAATAAAACCAAAGTGGAGGTTTTTATTATTGTGAGAAGGTTTTTGTATTTTACCCTAAAAGAAATTTAACTCACGAGTTGTACAACCAA
Downstream sequence (upto 100nt)
TTTTTTTTTTTTTTTTAAATATTGAATTCTCGATCATCGTAATACCTACTATTTTCAGCATTGGATATAATCAAACTTAATTATCTTTTCCAAAGCGATT
Mature tRNA
CCGACCUUAGCUCAGUUGGCAGAGCGAGGGAAUGUUAAUCAUUAGGUCGCUCGUUCGAUUCUAGCAGGUCGGA
Intron Sequence
AAGGCTGCTAAACTCGCCCGACCCGATAATGAAGGGATGTTGATAGAAATGCGCCCTTACCGATCAACCGAGAGGATGTTGATGGCTAGCGAGGTCTCGCCTTCGATCAAGGGGGGTCACTACGAGTGGGATCGTGGTAAGCCACTGTTACACAACACAGTCGTATCTGAACCGACCCGGGTAGGGGCGTAAGACCCCAGGC
Intron Position38-239
Infernal Score32.0
HMM Score13.70
Secondary structure Score18.30