Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID62291_PtRNAdb
Plant SourceNelumbo nucifera     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna257
tRNA locuschr-2 : 3848629 - 3848340 (-)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Nelumbo_nucifera plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Nelumbo_nucifera plant by clicking on the isodecoder]

tRNA Sequence
GGGGATGTAGCTCAAACGGTAGAGCGCTTGTTTTGCATGCGAGAGGTACGGGGTTTGATACCCCGCATCTCCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>................................................................................................................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTGATCGTTTCAAGAATTTCTTATTTTCTTTCATTTTTATTTATTATTTTTAATTTTTTGTTTTAATTTATTATAACAATTACTATCATAATTAAGAAAT
Downstream sequence (upto 100nt)
AATTATTTTACCCCCAAAACTCACCAATATATTTTAGGGTATTTTGATGTTTTCAGGAATTTCTAATTTGCCTTCATATTTTTTTATTATTTATTATTTT
Mature tRNA
GGGGAUGUAGCUCAAACGGUAGAGCGCUUGUUUUGCAUGCGAGAGGUACGGGGUUUGAUACCCCGCAUCUCCA
Intron Sequence
TGTGACAGGTATGGGGACCGATACCCCGCATCTCTAAATTATTTTTATCCTCACAACTCATCAATATATTTTAAGGTGTTTTGATCTTTCTAGGAATTTCTTATTTTCTTTCATTTTTATTTATTATTTTAAAATTTTTAATTACATTTATTATAACAATTACTATCATAATTAACAAATGAGGATGAAGATCAAATGGTAGAGCGTTCACTTTGCA
Intron Position38-254
Infernal Score27.3
HMM Score11.80
Secondary structure Score15.50