Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID62239_PtRNAdb
Plant SourceNelumbo nucifera     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna206
tRNA locuschr-2 : 49231610 - 49231539 (-)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Nelumbo_nucifera plant by clicking on the isoacceptor]

IsodecoderTTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTC isodecoder in Nelumbo_nucifera plant by clicking on the isodecoder]

tRNA Sequence
B-Box
TCCGTTGTCGTCCAGCGGTTAGTATATCTGGCTTTCACCCAGGAGACCCGGGTTCGATTCCCGGCAACGGAA
tRNA secondary structure
>>>>>>>..>>.>........<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TAATATAACATTTTATTCCAAAATGGAAGAAAAAGAAAACAAATTAATGTGTCTTATAGATTATACTGAAAGGTACTTTTAGTGCTTCAATATTCCTAAC
Downstream sequence (upto 100nt)
TGTTTTTGTAAGTTGAAACACTTTTTTTATTCTCTTCGGTCGGCATCTAGCTGCACAAGTGCACATCGGGAATATCTCCCCATCATTTTGTTAAATTCAG
Mature tRNA
UCCGUUGUCGUCCAGCGGUUAGUAUAUCUGGCUUUCACCCAGGAGACCCGGGUUCGAUUCCCGGCAACGGAA
HMM Score43.60
Secondary structure Score20.40