Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID62077_PtRNAdb
Plant SourceNelumbo nucifera     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-1.trna38
tRNA locuschr-1 : 68376015 - 68376088 (+)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Nelumbo_nucifera plant by clicking on the isoacceptor]

IsodecoderTCG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCG isodecoder in Nelumbo_nucifera plant by clicking on the isodecoder]

tRNA Sequence
GACCGCATAGCGCAGTGGATTAGCGCGTTTGACTTCGGATCAAAAGGTCGTGGGTTCGGCTCCCATTGTTGTTG
tRNA secondary structure
>>>.>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.
Upstream sequence (upto 100nt)
ATAATAATTTAATATATTACAAAATTAATAATGAAATTCTGTATAATAGTATCCTCTTTATCCAATATATTAATATAAAAGTTGAGAGTCTGGTATTAGC
Downstream sequence (upto 100nt)
TTTGATAGTGTACTTTTGTTACTTTTTTTTTTCATTTTGAATTAAGAAGCCAAACAATAAAAAAAATAAAAATTTTAAACTTAAATTGAGATATTTCAGA
Mature tRNA
GACCGCAUAGCGCAGUGGAUUAGCGCGUUUGACUUCGGAUCAAAAGGUCGUGGGUUCGGCUCCCAUUGUUGUUG
HMM Score45.90
Secondary structure Score13.00