Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID62065_PtRNAdb
Plant SourceNelumbo nucifera     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-1.trna285
tRNA locuschr-1 : 7225844 - 7225771 (-)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Nelumbo_nucifera plant by clicking on the isoacceptor]

IsodecoderAGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGT isodecoder in Nelumbo_nucifera plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGCCTATTAACTCAGTTCGTTAGAGCGTTGCAGTAGTAATGCGAAGGTCGCAGGTTCGAGACCTTCATGGGCCA
tRNA secondary structure
>>>>>>>...>>>.........<<<..>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
Upstream sequence (upto 100nt)
AGACCTGCATGGGCCAAAGTCAATATTATTTATGCATTTCACTTTTCTACTTCTTTACTTTTTTAATTACGAATGCTACCCTTCTAATGAATTGCCAGCT
Downstream sequence (upto 100nt)
ACAGTTTTTGGTAAAACATTGTCAATGTTATTTATGCTTTTGGCTTTTTCACTTCTTTACCTTTTTAATTACGAATGCTACATTGCTACCTTTCTAGTGT
Mature tRNA
GGCCUAUUAACUCAGUUCGUUAGAGCGUUGCAGUAGUAAUGCGAAGGUCGCAGGUUCGAGACCUUCAUGGGCCA
HMM Score36.00
Secondary structure Score8.10