Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID61695_PtRNAdb
Plant SourceMusa balbisiana     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-7.trna33
tRNA locuschr-7 : 7142228 - 7142403 (+)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Musa_balbisiana plant by clicking on the isoacceptor]

IsodecoderTCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCC isodecoder in Musa_balbisiana plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCGCATCTGGTGTAGTGGTATCATAGTACCCTCCCACGGTGCTGACCAGGGTTCGATTATATACATCCAGGGTTCGATTATATACATCCAGGGTTCGATTATATACATCCAGGGTTCGATTATATACATCCAGGGTTCGATTATATACATCCAGGGTTCGATTCCCTGGATGCGCA
tRNA secondary structure
>>>>>>>..>>>.........<<<.>>>...................................................................................................................<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTACTTCCTAAATGTGGTCTTCGTAGTCCCAACAATAATAATTACTTTATAGTATAAGATATCATAACAATATAATTATTTAGATCAAGCAACAATATAA
Downstream sequence (upto 100nt)
CTAATTTTGTTTATGACCCTTTTCTATTTTTTTTTAAATAAAAAATTAAAAATTATATTCATAAAAAAATTATATTCATAAAAAATTATATTCATAAAAA
Mature tRNA
GCGCAUCUGGUGUAGUGGUAUCAUAGUACCCUCCCAAUAUACAUCCAGGGUUCGAUUCCCUGGAUGCGCA
Intron Sequence
CGGTGCTGACCAGGGTTCGATTATATACATCCAGGGTTCGATTATATACATCCAGGGTTCGATTATATACATCCAGGGTTCGATTATATACATCCAGGGTTCGATT
Intron Position37-142
Infernal Score41.8
HMM Score20.80
Secondary structure Score21.00