Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID61611_PtRNAdb
Plant SourceMusa balbisiana     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-6.trna31
tRNA locuschr-6 : 23112652 - 23112744 (+)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Musa_balbisiana plant by clicking on the isoacceptor]

IsodecoderGCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCT isodecoder in Musa_balbisiana plant by clicking on the isodecoder]

tRNA Sequence
TCAACCTTAGCTCAGTTGGTAGAGTGTTGGATTGCTGATCCATGGTCATTGGCTCGAGTCCAATAGATCGAT
tRNA secondary structure
>>.>.>>..>>>>........<<<<..>>>>............................<<<<.....>>>>>.......<<<<<<<.<.<<.
Upstream sequence (upto 100nt)
ATAGCTGATAGTAGTTATTTTTAATTATTATTTTGGTGATGGACTGGAGAATTGTAGTGAGCCAAATATCGGTGTTTAGATTATTCCTCGGTGACTCCAA
Downstream sequence (upto 100nt)
TCACGTATGGCCCAAACATGATATATGAATATAAGAGGCCAAATCTATGACACCCATTTTACCATGTGCTATAAATAAGTTGAAAGTTTAGCGAATAGCC
Mature tRNA
UCAACCUUAGCUCAGUUGGUAGAGUGUUGGAUUGCUGAUCCAUGGUCAUUGGCUCGAGUCCAAUAGAUCGAU
Intron Sequence
TTGGGTGACGCCTTAAAGTAA
Intron Position38-58
Infernal Score33.7
HMM Score23.80
Secondary structure Score9.90