Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID61556_PtRNAdb
Plant SourceMusa balbisiana     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5.trna64
tRNA locuschr-5 : 11045325 - 11045242 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Musa_balbisiana plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Musa_balbisiana plant by clicking on the isodecoder]

tRNA Sequence
B-Box
CCGACCTTAGCTCAGATGGTAGAGCGGAGGACTGTAGTTGGTTCAGACATCCTTAGGTCGCTGGTTCGAATCCGGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>..................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TGATGTTTATGACGCTTTGGGTTATTACCACGTGGAATAATCACATATTATATATATTATATATTAGATAATTATAATAAAAGTGCCCCGTGTCACAAGA
Downstream sequence (upto 100nt)
GTTTTCGTTTTTTTAAAATCATTTTTATGTTTGGATTATTGTAATTTTAATGTTTATTAATATCCCTATTATTTATATTCACCGTCTTTATGTACCTTTA
Mature tRNA
CCGACCUUAGCUCAGAUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAAUCCGGCAGGUCGGA
Intron Sequence
TTGGTTCAGAC
Intron Position38-48
Infernal Score69.2
HMM Score37.70
Secondary structure Score31.50