Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID61347_PtRNAdb
Plant SourceMusa balbisiana     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-2.trna53
tRNA locuschr-2 : 16507076 - 16507003 (-)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Musa_balbisiana plant by clicking on the isoacceptor]

IsodecoderTCG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCG isodecoder in Musa_balbisiana plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GACCGCATAGCGCAGTGGATTAGCGCGTCTGACTTCGGATCAGAAGGTCGTGGGTTCGACTCCCACTGTGGTCG
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATCTAAATGTCAATACGTGTTGCTGTGAAAATGTGAGTTAAAGTTTCGGCCGAGAACGAAGAAAGTACTAATATATTTGATTTATCCCCACATCATCACC
Downstream sequence (upto 100nt)
AAAAGTTGTTTTTTATTCTCTTAACTAACGTCCAAACATCTGGATGATCGTGATGCGAGATGATGATGACTAAAGTAACGCTTTTAGATGCGAGAATTAT
Mature tRNA
GACCGCAUAGCGCAGUGGAUUAGCGCGUCUGACUUCGGAUCAGAAGGUCGUGGGUUCGACUCCCACUGUGGUCG
HMM Score60.40
Secondary structure Score21.50