Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID61182_PtRNAdb
Plant SourceMusa balbisiana     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-11.trna61
tRNA locuschr-11 : 14073332 - 14073258 (-)
IsoacceptorPhe

[NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Musa_balbisiana plant by clicking on the isoacceptor]

IsodecoderGAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAA isodecoder in Musa_balbisiana plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCTTAGGTAGCTCAGCATGGTTAGAGCAAAGGACTGAAAATCCATGTGTCAGTGGTTCGAATCCACTTCTAAGCA
tRNA secondary structure
>>>>>>>..>>>>..........<<<<.>.>>>.......<<<.<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CGATCCCAAAAGTTCTCGAGAGAAAGAAAGGACGGGTGACCCCAAATCTCCCGAAGGGGAATAATTCGTTTGACCATTTCACGAACAAGAAAACACTAAT
Downstream sequence (upto 100nt)
CACTAGCCAAAGCGAGCCGGATAAAGGAAGACAAGTGAATGAAAGAGGCTTGGAGGCAGAATTCCTAAGGTGGTTCTCGCGTCCCTATGCCCAAAGCGAG
Mature tRNA
GCUUAGGUAGCUCAGCAUGGUUAGAGCAAAGGACUGAAAAUCCAUGUGUCAGUGGUUCGAAUCCACUUCUAAGCA
HMM Score41.90
Secondary structure Score17.90