Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID60905_PtRNAdb
Plant SourceMusa acuminata     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-7.trna44
tRNA locuschr-7 : 23338202 - 23337971 (-)
IsoacceptorAsp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asp isoacceptor in Musa_acuminata plant by clicking on the isoacceptor]

IsodecoderATC

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATC isodecoder in Musa_acuminata plant by clicking on the isodecoder]

tRNA Sequence
GCGGGGATAGCCCAGTTGGGAGAGCGTCGCATCATACTCGATTATCACTTGAAGGTCGCGTGTTCGATCCACGCTCACCGCA
tRNA secondary structure
>>>>.>>..>>.>........<.<<.>..........>>>>.............................................................................................................................................................<<<<<....>>>>>.......<<<<<<<.<<<<.
Upstream sequence (upto 100nt)
AAATCTTTTTTTAATTTTTTATCTATATTCATTGTATAAAATATCTTAAAAGAGTGTATTAGTTATATTGTTATGCACCTTAAATAAAAATAATTACCTT
Downstream sequence (upto 100nt)
TTCTTGCTATCGATGTCACTTCAACAAAAGAATCGATCGCATCATACTCGATTATCAAGTCATTAATATTATGCATCGACTAACTTTAGACACTAACATT
Mature tRNA
GCGGGGAUAGCCCAGUUGGGAGAGCGUCGCAUCAUACUCGAUUAUCACUUGAAGGUCGCGUGUUCGAUCCACGCUCACCGCA
Intron Sequence
AGTCGTTAATATCATGCATCGACTAACTTTAGACACTAACATTATTCAGTAAAAATCTTTTTTATATTTATTTATCTCTATTCGTTGTTTAAATTATCTTAAAAGAGTGTATTAGTTATATTGTTATGCAACTTAAATAAAAATAATTAC
Intron Position48-197
Infernal Score30.3
HMM Score24.50
Secondary structure Score5.80