Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID60433_PtRNAdb
Plant SourceMusa acuminata     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-11.trna40
tRNA locuschr-11 : 17817449 - 17817520 (+)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Musa_acuminata plant by clicking on the isoacceptor]

IsodecoderATT

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATT isodecoder in Musa_acuminata plant by clicking on the isodecoder]

tRNA Sequence
TCCTTAGTAGCTCAATGGTAGAGCGGCCAACTATTAATTGATTAGTTGTAGGTTTGAATCCTACTTGGGGCT
tRNA secondary structure
.>>>>>>..>>>>.......<<<<.>.>>>.......<<<.<.....>>>>>.......<<<<<<<<<<<..
Upstream sequence (upto 100nt)
CTACGAAGAAGTTCCGGGAGTTACGAAGGAAACTTCAGACTCATATTATTCATGGGTTGAGAACAGGGGTTGAACTCTATGAGGTCAAATCTCCCGTTGT
Downstream sequence (upto 100nt)
GTCTTTGTTTATATTACATTCTATCTCATCGTATCATTCTATTCTACGATATTTGAGAATCACCGTCATACATCAAAGATGCAATTATTGATTTTCCCGA
Mature tRNA
UCCUUAGUAGCUCAAUGGUAGAGCGGCCAACUAUUAAUUGAUUAGUUGUAGGUUUGAAUCCUACUUGGGGCU
HMM Score38.70
Secondary structure Score5.70