Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID60375_PtRNAdb
Plant SourceMusa acuminata     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-10.trna38
tRNA locuschr-10 : 31752914 - 31752831 (-)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Musa_acuminata plant by clicking on the isoacceptor]

IsodecoderCAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAA isodecoder in Musa_acuminata plant by clicking on the isodecoder]

tRNA Sequence
GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTGAGAGGGCGTGGGTTCAAATCCCACTTCTGACA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.><.<<<...>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ACAGTAAGGCCTTGACTTGCGATGTGGTAGGGAAGTGAGAAGATTCAGAATACGACACTTACTTCAACTATAATCTTACACAATTATCTAGACATAAGAG
Downstream sequence (upto 100nt)
AAATAAATTATTTTGTTTTATTTATTTGTTTTGTTGTTTTTTTTCTTATTAATCGTTCCTACGAAACAACAAAAGCAGATATATCCTTTATCAGAAAATC
Mature tRNA
GUCAGGAUGGCCGAGUGGUCUAAGGCGCCAGACUCAAGUUCUGGUCCUCGUGAGAGGGCGUGGGUUCAAAUCCCACUUCUGACA
HMM Score54.60
Secondary structure Score26.40