Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID60262_PtRNAdb
Plant SourceMiscanthus sacchariflorus     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-6.trna19
tRNA locuschr-6 : 26960424 - 26960495 (+)
IsoacceptorAsp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asp isoacceptor in Miscanthus_sacchariflorus plant by clicking on the isoacceptor]

IsodecoderGTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTC isodecoder in Miscanthus_sacchariflorus plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTCGTTGTAGTATCGTGTTGAGTATTCCCGCCTGTCTCGCGGTCGACCCGGGTTCGATCCCCGGCAACTTCG
tRNA secondary structure
>..>>>>..>>>>........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<..<.
Upstream sequence (upto 100nt)
GCACCTTCTTCCACAGACGGACAGATCACATACTCGCATCAGGCATAACCAACCAATAATATGCCTCATTATTCAATTAATTAAGGTCATATCTAACAAC
Downstream sequence (upto 100nt)
ATTTCAGCTATTTTTTTTGGGTTTCTGCTAATAAAGCTGCCTTTTTTATTGTCTTTTGTTAAGAATGCAAGCATCAAACGTGCACGGAGAATAATTTTTT
Mature tRNA
GUCGUUGUAGUAUCGUGUUGAGUAUUCCCGCCUGUCUCGCGGUCGACCCGGGUUCGAUCCCCGGCAACUUCG
HMM Score14.00
Secondary structure Score6.20