Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID60249_PtRNAdb
Plant SourceMiscanthus sacchariflorus     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5.trna2
tRNA locuschr-5 : 6156876 - 6157039 (+)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Miscanthus_sacchariflorus plant by clicking on the isoacceptor]

IsodecoderAGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGT isodecoder in Miscanthus_sacchariflorus plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCGTTTAGTAAGCGGGAGGTCTAGACAATTATTTTCCCTTTTTGCAAATTCATTCTGTAGATACTTTTTCAATTTTTTCCCCTTTTTGCAAATTCATTCTGTAGTTTGGTCTTGAGTTCGACTCTCAACGAAAGCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<..>.>...............................................................................................<.<..........>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GAATGGTAGATGTAGCTAGATATTGTTGTACACTGAAGTAGATCCATGAATAGTAAAGATTTAAATTACCTAATACAGTTGCAAATTACCTAATAGAGTT
Downstream sequence (upto 100nt)
TTTTTTATTCTGTAGCCAATTATTTTCCCTTTTTGCAAATTCATTCTGTAGTTTTCCCCTTTTTGCAAATTCATTCTGTAGCTATTTTTTTTATTTTCCC
Mature tRNA
GCUUUCGUAGCUCAGUUGGUUAGAGCACCCGUUUAGUAUUCUGUAGUUUGGUCUUGAGUUCGACUCUCAACGAAAGCA
Intron Sequence
AGCGGGAGGTCTAGACAATTATTTTCCCTTTTTGCAAATTCATTCTGTAGATACTTTTTCAATTTTTTCCCCTTTTTGCAAATTCA
Intron Position39-124
Infernal Score46.6
HMM Score34.70
Secondary structure Score11.90