Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID60028_PtRNAdb
Plant SourceMedicago truncatula     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-8.trna91
tRNA locuschr-8 : 38619276 - 38619192 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Medicago_truncatula plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Medicago_truncatula plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
TGGGGTGGTGGCGCAGTTGGCTAGTGTGTAGGTCTCATAGCTAAGAGTTATCCTGAGGTCGAGAGTTCGAGCCTCTCTCCCCCAT
tRNA secondary structure
>>>>>.>>..>>>>.........<<<<.>>>>...................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTTTTTGATCAATAAGAAGAGAGAACAACAAAGTTGTCCCAAAAATTATACCAAAATAGTTGTTAAAATATCATTACTTTATTGTATATATGTAAACAAA
Downstream sequence (upto 100nt)
CAATCTTTTTTTCTCAAAATGTACCTACTGAAACACAGAGTTAAACTTACCCTCACTAAATAATCTAATATATAAAATTATTTAGGCTAAATTATACTTT
Mature tRNA
UGGGGUGGUGGCGCAGUUGGCUAGUGUGUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGAGCCUCUCUCCCCCAU
Intron Sequence
GCTAAGAGTT
Intron Position40-49
Infernal Score43.1
HMM Score30.40
Secondary structure Score12.70