Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID59097_PtRNAdb
Plant SourceManihot esculenta     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG8.trna16
tRNA locuschr-LG8 : 33812454 - 33812548 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Manihot_esculenta plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Manihot_esculenta plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTGGCTCAGTTGGTAGAGCAGAGGACTGTAGTTGGATTGTGTACCTTCACGCAATCCTTAGGTCGCTGGTTCGAATCCGGCAGCTCGGA
tRNA secondary structure
>>>>.>>..>>>>........<<<<.>>>>>.............................<<<<<.....>>>>>.......<<<<<<<.<<<<.
Upstream sequence (upto 100nt)
AAAAAAAAGAAAGAAAGAAAAGAAAGACAGTATCGGCAAAAAAAGTATTAAGTTTAAAATCTATCTTTTTTAGTTCATAGATCGCATAAATCACCGCTCG
Downstream sequence (upto 100nt)
AATCTTCCTTTTCCCCATTTTCCTTTTTTTTTGTTTTTCCCTGTACTCGGCTTGCAGCTGCTTCTGTATTTTTTCTTTTAAACGAAACACGAATAACACA
Mature tRNA
CCGACCUUGGCUCAGUUGGUAGAGCAGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAAUCCGGCAGCUCGGA
Intron Sequence
TTGGATTGTGTACCTTCACGCA
Intron Position38-59
Infernal Score64.0
HMM Score41.20
Secondary structure Score22.80